View on GitHub

Family history of Lung cancer GWAx

Extended data from our paper

Additional data from Gabriel and Atkins

We have uploaded an excel spreadsheet with our PRS and summary of results. Which you can download here

The code that was generated for this paper can be found here

Summary Statistics

For use of the summary statistics from our paper - users must agree that they will use these summary statistics to advance research in lung cancer and will not try to identify individuals that were part of this study. If you use these summary statistics in your work, please give us a cite if you wish but more importantly please tag me (twitter @josh_atkins311) in any preprints/papers as I would love to read everyone’s work that uses these summary statistics.

If you agree to the above; Summary statistics from our meta

Family history of lung cancer GWAx results

Dynamic manhattan plot with functional information/smoking trait Zs etc, large html - download and open in chrome

ZxZ plot of family history GWAS vs TRICL lung cancer

Genetic correlation of family history GWAS across GSCAN smoking traits

PRS

Genome-wide associated loci from Meta-analysis of family history GWAx and TRICL

View the web table here

Download the table as a TXT here

Smoking PRS (smPRS)

web table of variants and all information including GTEx variables

eQTL PRS (eQTLPRS)

web table of variants and all information including GTEx variables

The combined list (cmbPRS)

web table of variants and all information including GTEx variables

Contact

Email the following atkinsj at iarc (dot) who (dot) int or contact me via twitter: @josh_atkins311