| rs71658797 |
1p31.1 |
chr1:77967507 |
T |
A |
1.77E-12 |
1.107 [1.079-1.136] |
0.09 |
AK5, FUBP1 |
- |
FUBP1 |
FUBP1 |
3.12E-10 |
7.28E-05 |
1.28E-02 |
| rs78062588 |
1q21.3 |
chr1:154566225 |
T |
C |
4.03E-08 |
0.904 [0.868-0.94] |
0.07 |
CHRNB2 |
CPD |
- |
CHRNB2 |
1.15E-03 |
6.99E-06 |
1.73E-02 |
| rs4252707 |
1q32.1 |
chr1:204508147 |
G |
A |
9.11E-10 |
0.931 [0.908-0.954] |
0.22 |
MDM4 |
- |
- |
- |
1.42E-01 |
1.57E-03 |
- |
| rs7551222 |
1q32.1 |
chr1:204599295 |
A |
G |
2.56E-08 |
1.057 [1.037-1.076] |
0.32 |
MDM4 |
- |
- |
- |
1.97E-01 |
1.44E-03 |
3.26E-02 |
| rs185666783 |
4q13.2 |
chr4:67833774 |
G |
C |
5.56E-09 |
1.062 [1.042-1.083] |
0.46 |
- |
- |
- |
- |
4.92E-05 |
3.34E-02 |
1.66E-04 |
| rs35812074 |
5p15.33 |
chr5:1267881 |
C |
G |
4.12E-08 |
1.227 [1.154-1.3] |
0.02 |
CLPTM1L,TERT |
- |
- |
- |
- |
1.05E-01 |
6.82E-01 |
| rs13156167 |
5p15.33 |
chr5:1275857 |
T |
C |
4.08E-14 |
1.121 [1.091-1.151] |
0.15 |
CLPTM1L,TERT |
- |
- |
- |
3.10E-23 |
5.13E-01 |
4.79E-01 |
| rs2853677 |
5p15.33 |
chr5:1287194 |
A |
G |
2.87E-29 |
1.114 [1.095-1.133] |
0.41 |
CLPTM1L,TERT |
- |
- |
- |
6.90E-32 |
5.42E-01 |
1.74E-01 |
| rs2735947 |
5p15.33 |
chr5:1299392 |
G |
A |
3.48E-13 |
0.904 [0.877-0.931] |
0.14 |
CLPTM1L,TERT |
- |
- |
- |
4.01E-16 |
1.08E-01 |
3.77E-02 |
| rs2735845 |
5p15.33 |
chr5:1300584 |
C |
G |
3.39E-19 |
1.111 [1.088-1.134] |
0.20 |
CLPTM1L,TERT |
- |
- |
- |
- |
4.90E-02 |
5.70E-02 |
| rs380286 |
5p15.33 |
chr5:1320247 |
G |
A |
4.93E-42 |
0.882 [0.864-0.9] |
0.44 |
CLPTM1L,TERT |
- |
- |
- |
9.89E-22 |
5.81E-20 |
1.33E-03 |
| rs34152723 |
5p15.33 |
chr5:1360534 |
T |
C |
7.26E-10 |
0.893 [0.857-0.929] |
0.07 |
CLPTM1L,TERT |
- |
- |
- |
4.00E-06 |
3.42E-04 |
2.23E-01 |
| rs7766641 |
6p22.2 |
chr6:26184102 |
G |
A |
7.05E-14 |
0.926 [0.906-0.946] |
0.28 |
HIST1H1E,HIST1H2AD,HIST1H2AE,HIST1H2BD,HIST1H2BE,HIST1H2BF,HIST1H2BG,HIST1H3D,HIST1H3E,HIST1H4D,HIST1H4E |
CPD |
- |
- |
4.79E-04 |
6.06E-08 |
2.98E-04 |
| rs6913550 |
6p22.2 |
chr6:26540683 |
C |
T |
4.82E-14 |
0.918 [0.896-0.94] |
0.24 |
BTN1A1,HCG11,HMGN4 |
- |
ZNF322,GUSBP2,HMGN4,ABT1 |
ZNF322,HIST1H3E, |
2.09E-02 |
2.26E-03 |
9.33E-05 |
| rs192804591 |
6p22.1 - MHC |
chr6:27729706 |
T |
A |
1.31E-11 |
1.135 [1.098-1.171] |
0.06 |
HIST1H2AI,HIST1H2BL,HIST1H3H,LOC100131289 |
- |
- |
- |
6.39E-02 |
8.03E-08 |
4.13E-03 |
| rs2531814 |
6p22.1 - MHC |
chr6:28425755 |
A |
G |
1.59E-08 |
0.928 [0.903-0.954] |
0.15 |
GPX6,ZSCAN23 |
- |
ZNF603P,ZSCAN23 |
Many |
1.01E-03 |
9.55E-02 |
1.80E-01 |
| rs116591906 |
6p22.1 - MHC |
chr6:28583392 |
A |
G |
7.43E-11 |
1.113 [1.08-1.145] |
0.12 |
ZBED9 |
- |
- |
- |
- |
2.35E-06 |
8.04E-03 |
| rs9258381 |
6p22.1 - MHC |
chr6:29753348 |
G |
A |
3.06E-20 |
1.112 [1.09-1.135] |
0.14 |
HCG4,HLA-F-AS1,HLA-G,IFITM4P,LOC554223 |
- |
Many |
Many |
5.51E-05 |
1.44E-07 |
- |
| rs3129813 |
6p22.1 - MHC |
chr6:30338247 |
G |
A |
3.08E-08 |
1.054 [1.035-1.073] |
0.37 |
HCG17,HCG18,RPP21,TRIM39,TRIM39-RPP21 |
- |
HCP5B,HLA-F-AS1 |
- |
2.41E-02 |
1.82E-05 |
4.26E-02 |
| rs6457312 |
6p21.33 - MHC |
chr6:31012941 |
A |
G |
3.18E-13 |
1.079 [1.058-1.099] |
0.40 |
HCG22,MUC22 |
- |
- |
- |
8.10E-01 |
3.19E-08 |
1.96E-03 |
| rs9257054 |
6p21.33 - MHC |
chr6:31072949 |
C |
T |
3.73E-11 |
1.063 [1.045-1.081] |
0.42 |
C6orf15,CCHCR1,CDSN,HCG22,PSORS1C1,PSORS1C2 |
- |
Many |
Many |
1.72E-02 |
1.34E-07 |
4.89E-02 |
| rs9468936 |
6p21.33 - MHC |
chr6:31269884 |
T |
G |
9.41E-12 |
0.937 [0.919-0.956] |
0.42 |
HLA-C |
- |
Many |
Many |
2.29E-03 |
2.43E-05 |
1.01E-02 |
| rs4143333 |
6p21.33 - MHC |
chr6:31348519 |
A |
G |
5.63E-25 |
1.163 [1.134-1.191] |
0.08 |
HLA-B,MICA |
- |
Many |
Many |
8.05E-05 |
1.11E-15 |
3.51E-05 |
| rs2516470 |
6p21.33 - MHC |
chr6:31407331 |
C |
G |
2.09E-13 |
0.93 [0.911-0.95] |
0.36 |
HCG26,HCP5,MICA |
- |
Many |
Many |
- |
5.79E-08 |
3.55E-03 |
| rs3096703 |
6p21.32 - MHC |
chr6:32184094 |
G |
A |
6.18E-09 |
1.055 [1.037-1.073] |
0.43 |
AGER,AGPAT1,EGFL8,GPSM3,MIR6721,MIR6833,NOTCH4,PBX2,PPT2-EGFL8,RNF5,RNF5P1 |
- |
Many |
Many |
5.54E-01 |
4.84E-07 |
3.97E-03 |
| rs3130302 |
6p21.32 - MHC |
chr6:32204642 |
T |
C |
4.05E-09 |
0.941 [0.92-0.961] |
0.27 |
GPSM3,NOTCH4,PBX2 |
- |
- |
- |
1.21E-02 |
8.38E-04 |
0.350218516 |
| rs7753228 |
6p21.32 - MHC |
chr6:32503794 |
C |
T |
3.41E-10 |
1.154 [1.109-1.199] |
0.02 |
HLA-DRB1,HLA-DRB5,HLA-DRB6 |
- |
Many |
Many |
4.01E-01 |
2.06E-03 |
1.80E-01 |
| rs6904562 |
6p21.32 - MHC |
chr6:32556007 |
A |
T |
1.25E-09 |
1.2 [1.141-1.259] |
0.06 |
HLA-DQA1,HLA-DRB1,HLA-DRB6 |
- |
- |
- |
1.59E-02 |
1.14E-03 |
5.34E-02 |
| rs62406303 |
6p21.32 - MHC |
chr6:32585294 |
T |
G |
2.28E-09 |
0.926 [0.9-0.951] |
0.21 |
HLA-DQA1,HLA-DQB1,HLA-DRB1 |
- |
- |
- |
9.96E-05 |
9.24E-04 |
- |
| rs28383322 |
6p21.32 - MHC |
chr6:32592796 |
C |
T |
2.21E-10 |
0.929 [0.906-0.952] |
0.23 |
HLA-DQA1,HLA-DQB1,HLA-DRB1 |
- |
Many |
STK19B,HLA-DRB6 |
7.94E-03 |
1.47E-09 |
1.61E-01 |
| rs9272306 |
6p21.32 - MHC |
chr6:32603880 |
C |
T |
2.85E-12 |
1.1 [1.073-1.126] |
0.05 |
HLA-DQA1,HLA-DQB1,HLA-DRB1 |
- |
Many |
Many |
|
1.25E-08 |
2.94E-03 |
| rs9272327 |
6p21.32 - MHC |
chr6:32604188 |
G |
A |
4.13E-08 |
1.074 [1.048-1.099] |
0.08 |
HLA-DQA1,HLA-DQB1,HLA-DRB1 |
- |
Many |
Many |
9.20E-02 |
3.67E-08 |
2.72E-03 |
| rs1794514 |
6p21.32 - MHC |
chr6:32667473 |
G |
C |
7.55E-33 |
1.147 [1.124-1.169] |
0.17 |
HLA-DQA2,HLA-DQB1 |
- |
Many |
Many |
5.19E-02 |
2.45E-15 |
1.78E-04 |
| rs2621403 |
6p21.32 - MHC |
chr6:32749795 |
A |
T |
1.60E-09 |
0.944 [0.925-0.963] |
0.37 |
HLA-DOB,HLA-DQA2,HLA-DQB2,TAP2 |
- |
HLA-DOB,HLA-DQB1,HLA-DRB5 |
HLA-DOB,HLA-DQB1,C4A |
1.34E-01 |
6.79E-08 |
3.47E-03 |
| rs239933 |
6q27 |
chr6:167413230 |
A |
G |
6.70E-12 |
0.939 [0.921-0.957] |
0.44 |
FGFR1OP,MIR3939,RNASET2 |
- |
RNASET2, FGFR1OP |
RNASET2 |
1.24E-05 |
1.15E-02 |
3.89E-02 |
| rs11778371 |
8p21.2 |
chr8:27319905 |
C |
T |
4.36E-10 |
0.881 [0.841-0.921] |
0.07 |
CHRNA2,EPHX2,MIR6842,PTK2B |
yes AgeofIn,smkIn* |
- |
CHRNA2, TRIM35 |
3.00E-05 |
8.53E-03 |
3.68E-02 |
| rs10091679 |
8p21.2 |
chr8:27351738 |
G |
A |
4.75E-08 |
1.087 [1.057-1.117] |
0.09 |
CHRNA2,EPHX2,PTK2B |
- |
- |
- |
5.86E-04 |
5.29E-04 |
9.32E-02 |
| rs6558008 |
8p21.1 |
chr8:27438306 |
A |
C |
8.15E-12 |
0.928 [0.906-0.949] |
0.23 |
CLU,EPHX2,MIR6843 |
yes smkIn |
- |
- |
2.67E-04 |
3.36E-03 |
- |
| rs1333047 |
9p21.3 |
chr9:22124504 |
A |
T |
9.57E-09 |
0.949 [0.93-0.967] |
0.48 |
CDKN2B-AS1 |
- |
- |
- |
2.72E-03 |
7.51E-05 |
6.78E-01 |
| rs72905558 |
11p11.2 |
chr11:48201643 |
A |
T |
2.41E-09 |
0.913 [0.883-0.943] |
0.14 |
OR4B1,PTPRJ |
- |
C1QTNF4 |
MTCH2 |
1.50E-03 |
2.22E-01 |
2.51E-03 |
| rs61612408 |
11q24.2 |
chr11:125495044 |
G |
A |
3.07E-08 |
0.903 [0.867-0.939] |
0.07 |
ACRV1,CHEK1,EI24,STT3A |
- |
CHEK1 |
CHEK1 |
1.40E-01 |
1.15E-05 |
7.26E-02 |
| rs7953330 |
12p13.33 |
chr12:998819 |
G |
C |
1.30E-18 |
0.916 [0.897-0.936] |
0.29 |
RAD52,WNK1 |
- |
RAD52 |
RAD52 |
3.70E-02 |
7.26E-13 |
- |
| rs7487683 |
12p13.33 |
chr12:1036042 |
C |
T |
4.98E-11 |
0.844 [0.793-0.894] |
0.03 |
RAD52,WNK1 |
- |
- |
- |
8.00E-03 |
8.48E-05 |
2.61E-05 |
| rs11571734 |
13q13.1 |
chr13:32940888 |
C |
T |
9.24E-09 |
0.943 [0.923-0.963] |
0.28 |
BRCA2,N4BP2L1 |
- |
BRCA2 |
- |
4.12E-04 |
- |
- |
| rs11571815 |
13q13.1 |
chr13:32968550 |
G |
A |
6.98E-32 |
1.695 [1.607-1.783] |
0.01 |
BRCA2,N4BP2L1,N4BP2L2 |
- |
- |
- |
1.93E-03 |
1.10E-15 |
- |
| rs506120 |
15q15.3 |
chr15:43802024 |
C |
T |
6.37E-11 |
0.936 [0.916-0.956] |
0.30 |
MAP1A,PPIP5K1,RNU6-28P,TP53BP1 |
- |
Many |
Many |
4.28E-02 |
1.67E-03 |
4.34E-01 |
| rs66759488 |
15q21.1 |
chr15:47577451 |
G |
A |
3.72E-10 |
1.061 [1.042-1.08] |
0.36 |
SEMA6D |
- |
- |
- |
1.95E-03 |
1.36E-03 |
4.98E-04 |
| rs77468143 |
15q21.1 |
chr15:49376624 |
T |
G |
3.46E-08 |
0.943 [0.923-0.964] |
0.28 |
COPS2,SECISBP2L |
- |
SECISBP2L,FAM227B,RP11-295H24.3 |
- |
1.69E-16 |
6.79E-01 |
3.60E-01 |
| rs12441817 |
15q24.1 |
chr15:75025814 |
T |
C |
4.77E-08 |
1.096 [1.063-1.129] |
0.08 |
CSK,CYP1A1,CYP1A2,EDC3 |
- |
RP11-10O17.1 |
CYP1A1,SEMA7A |
2.19E-04 |
- |
0.4430523075 |
| rs16969892 |
15q25.1 |
chr15:78774737 |
A |
G |
3.71E-08 |
0.835 [0.771-0.899] |
0.03 |
HYKK,IREB2 |
CPD |
- |
- |
5.76E-02 |
3.44E-05 |
5.47E-03 |
| rs117131212 |
15q25.1 |
chr15:78819478 |
A |
G |
3.01E-08 |
1.138 [1.092-1.183] |
0.06 |
CHRNA5,HYKK,IREB2,PSMA4 |
- |
- |
- |
1.24E-02 |
5.02E-04 |
3.05E-03 |
| rs55781567 |
15q25.1 |
chr15:78857986 |
C |
G |
4.59E-115 |
1.241 [1.222-1.259] |
0.37 |
CHRNA3,CHRNA5,HYKK,PSMA4 |
CPD Cess |
CHRNA5 |
CHRNA5,CHRNA3,PSMA4 |
2.83E-48 |
4.61E-41 |
9.13E-21 |
| rs2229961 |
15q25.1 |
chr15:78880752 |
G |
A |
9.50E-16 |
1.325 [1.257-1.394] |
0.01 |
CHRNA3,CHRNA5,CHRNB4,PSMA4 |
CPD Cess |
- |
- |
1.33E-09 |
7.89E-09 |
3.74E-02 |
| rs76474922 |
15q25.1 |
chr15:78884553 |
A |
C |
1.79E-23 |
0.838 [0.803-0.873] |
0.09 |
CHRNA3,CHRNA5,CHRNB4,PSMA4 |
CPD |
CHRNA5 |
- |
3.47E-08 |
5.68E-15 |
1.04E-04 |
| rs12443170 |
15q25.1 |
chr15:78907736 |
G |
A |
3.65E-40 |
0.828 [0.8-0.856] |
0.13 |
CHRNA3,CHRNA5,CHRNB4 |
CPD |
- |
CHRNA3 |
2.49E-13 |
9.31E-14 |
6.53E-09 |
| rs8192479 |
15q25.1 |
chr15:78909398 |
C |
T |
3.78E-08 |
1.202 [1.136-1.268] |
0.02 |
CHRNA3,CHRNA5,CHRNB4 |
CPD |
- |
CTSH |
2.03E-05 |
5.40E-07 |
1.98E-02 |
| rs151118057 |
15q25.1 |
chr15:78988620 |
G |
A |
1.04E-11 |
0.772 [0.697-0.847] |
0.01 |
. |
- |
- |
- |
1.13E-03 |
1.60E-03 |
1.44E-03 |
| rs28406853 |
15q25.1 |
chr15:79034874 |
A |
G |
4.17E-08 |
1.128 [1.085-1.172] |
0.04 |
ADAMTS7,LOC646938 |
- |
- |
- |
9.86E-05 |
2.01E-05 |
4.33E-01 |
| rs7177201 |
15q25.1 |
chr15:79065380 |
C |
T |
3.80E-24 |
0.892 [0.87-0.914] |
0.25 |
ADAMTS7,LOC646938 |
- |
- |
- |
2.86E-09 |
- |
3.95E-03 |
| rs11638020 |
15q25.1 |
chr15:79107724 |
G |
A |
1.37E-16 |
1.08 [1.062-1.099] |
0.39 |
ADAMTS7 |
CPD |
- |
ADAMTS7 |
1.49E-09 |
3.18E-07 |
5.26E-02 |
| rs3865453 |
19q13.2 |
chr19:41338556 |
C |
T |
9.84E-14 |
0.868 [0.831-0.905] |
0.08 |
CYP2A6,CYP2A7 |
CPD Cess |
CYP2G1P |
- |
3.06E-05 |
2.13E-05 |
7.61E-03 |
| rs56113850 |
19q13.2 |
chr19:41353107 |
C |
T |
1.50E-20 |
0.911 [0.891-0.93] |
0.41 |
CYP2A6,CYP2A7 |
CPD Cess |
CYP2A7,CYP2A6,CTC-490E21.11 |
CYP2A7 |
8.64E-10 |
7.18E-11 |
1.14E-03 |
| rs1801272 |
19q13.2 |
chr19:41354533 |
A |
T |
3.77E-10 |
0.825 [0.765-0.885] |
0.03 |
CYP2A6,CYP2A7 |
CPD Cess |
- |
- |
1.52E-02 |
4.18E-05 |
1.72E-02 |
| rs11697662 |
20q13.33 |
chr20:61992005 |
T |
C |
1.49E-08 |
1.071 [1.047-1.094] |
0.20 |
CHRNA4 |
CPD Cess |
- |
CHRNA4 |
6.42E-02 |
5.50E-06 |
3.40E-03 |
| rs2281925 |
20q13.33 |
chr20:62376503 |
G |
A |
3.49E-09 |
1.091 [1.062-1.12] |
0.10 |
RTEL1 |
- |
- |
- |
3.05E-08 |
9.46E-01 |
5.34E-02 |